Detection of respiratory viruses and subtype identification of influenza A viruses by GreeneChipResp oligonucleotide microarray.
| Title: | Detection of respiratory viruses and subtype identification of influenza A viruses by GreeneChipResp oligonucleotide microarray. |
|---|---|
| Authors: | Quan PL; Jerome L. and Dawn Greene Infectious Disease Laboratory, Mailman School of Public Health, Columbia University, 722 West 168th Street, Room 1801, New York, NY 10032, USA.; Palacios G; Jabado OJ; Conlan S; Hirschberg DL; Pozo F; Jack PJ; Cisterna D; Renwick N; Hui J; Drysdale A; Amos-Ritchie R; Baumeister E; Savy V; Lager KM; Richt JA; Boyle DB; García-Sastre A; Casas I; Perez-Breña P; Briese T; Lipkin WI |
| Source: | Journal of clinical microbiology [J Clin Microbiol] 2007 Aug; Vol. 45 (8), pp. 2359-64. Date of Electronic Publication: 2007 Jun 06. |
| Publication Type: | Journal Article; Research Support, N.I.H., Extramural; Validation Study |
| Language: | English |
| Journal Info: | Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 7505564 Publication Model: Print-Electronic Cited Medium: Print ISSN: 0095-1137 (Print) Linking ISSN: 00951137 NLM ISO Abbreviation: J Clin Microbiol Subsets: MEDLINE |
| Imprint Name(s): | Original Publication: Washington, American Society for Microbiology. |
| MeSH Terms: | Influenza A virus/*classification ; Oligonucleotide Array Sequence Analysis/*methods ; Respiratory Tract Infections/*virology ; Viruses/*isolation & purification; Hemagglutinin Glycoproteins, Influenza Virus/genetics ; Influenza A virus/genetics ; Neuraminidase/genetics ; Rhinovirus/classification ; Rhinovirus/genetics ; Viral Proteins/genetics ; Viruses/genetics ; Humans |
| Abstract: | Acute respiratory infections are significant causes of morbidity, mortality, and economic burden worldwide. An accurate, early differential diagnosis may alter individual clinical management as well as facilitate the recognition of outbreaks that have implications for public health. Here we report on the establishment and validation of a comprehensive and sensitive microarray system for detection of respiratory viruses and subtyping of influenza viruses in clinical materials. Implementation of a set of influenza virus enrichment primers facilitated subtyping of influenza A viruses through the differential recognition of hemagglutinins 1 through 16 and neuraminidases 1 through 9. Twenty-one different respiratory virus species were accurately characterized, including a recently identified novel genetic clade of rhinovirus. |
| References: | J Clin Microbiol. 2006 Aug;44(8):2863-71. (PMID: 16891504); Emerg Infect Dis. 2006 Apr;12(4):638-46. (PMID: 16704813); J Infect Dis. 2006 Nov 15;194(10):1398-402. (PMID: 17054069); Anal Chem. 2006 Nov 15;78(22):7610-5. (PMID: 17105150); Nucleic Acids Res. 2006;34(22):6605-11. (PMID: 17135211); J Clin Microbiol. 2007 Feb;45(2):443-52. (PMID: 17135438); Emerg Infect Dis. 2007 Jan;13(1):73-81. (PMID: 17370518); J Clin Microbiol. 2000 Apr;38(4):1552-8. (PMID: 10747142); Lancet Infect Dis. 2002 Jan;2(1):25-32. (PMID: 11892493); J Clin Microbiol. 2002 Oct;40(10):3666-70. (PMID: 12354863); J Med Virol. 2003 Jan;69(1):132-44. (PMID: 12436489); J Clin Microbiol. 2003 Jan;41(1):100-5. (PMID: 12517833); Arch Intern Med. 2003 Feb 24;163(4):487-94. (PMID: 12588210); J Clin Microbiol. 2003 Sep;41(9):4378-81. (PMID: 12958272); Pediatr Pulmonol. 2003 Dec;36(6):469-74. (PMID: 14618637); J Med Virol. 2004 Mar;72(3):484-95. (PMID: 14748074); Emerg Infect Dis. 2004 Feb;10(2):300-3. (PMID: 15030701); PLoS Biol. 2003 Nov;1(2):E2. (PMID: 14624234); J Clin Microbiol. 2004 Apr;42(4):1564-9. (PMID: 15071005); J Mol Diagn. 2004 May;6(2):125-31. (PMID: 15096568); J Clin Microbiol. 2004 May;42(5):2173-85. (PMID: 15131186); Proc Natl Acad Sci U S A. 1990 Jul;87(14):5509-13. (PMID: 2196570); Genomics. 1992 Aug;13(4):1322-4. (PMID: 1505965); Proc Int Conf Intell Syst Mol Biol. 1995;3:21-9. (PMID: 7584439); Clin Infect Dis. 1998 Jun;26(6):1397-402. (PMID: 9636869); Bioinformatics. 1998;14(1):48-54. (PMID: 9520501); J Clin Microbiol. 2005 Feb;43(2):565-71. (PMID: 15695646); Emerg Infect Dis. 2005 Feb;11(2):310-3. (PMID: 15752453); Semin Pediatr Infect Dis. 2005 Apr;16(2):84-92. (PMID: 15825139); J Virol Methods. 2005 Oct;129(1):1-7. (PMID: 15961167); Emerg Infect Dis. 2006 Jan;12(1):9-14. (PMID: 16494710); J Clin Microbiol. 2006 Apr;44(4):1209-18. (PMID: 16597840); Diagn Mol Pathol. 2006 Sep;15(3):169-73. (PMID: 16932073) |
| Grant Information: | R21 AI056118 United States AI NIAID NIH HHS; AI55466 United States AI NIAID NIH HHS; R01 HL083850 United States HL NHLBI NIH HHS; U54AI57158 United States AI NIAID NIH HHS; U01 AI070411 United States AI NIAID NIH HHS; R01 AI051292 United States AI NIAID NIH HHS; R21 AI055466 United States AI NIAID NIH HHS; AI062705 United States AI NIAID NIH HHS; U54 AI057158 United States AI NIAID NIH HHS; AI51292 United States AI NIAID NIH HHS; HL083850-01 United States HL NHLBI NIH HHS; UC1 AI062705 United States AI NIAID NIH HHS; U01AI070411 United States AI NIAID NIH HHS; AI056118 United States AI NIAID NIH HHS |
| Substance Nomenclature: | 0 (Hemagglutinin Glycoproteins, Influenza Virus); 0 (Viral Proteins); EC 3.2.1.18 (Neuraminidase) |
| Entry Date(s): | Date Created: 20070608 Date Completed: 20071106 Latest Revision: 20191210 |
| Update Code: | 20260130 |
| PubMed Central ID: | PMC1951265 |
| DOI: | 10.1128/JCM.00737-07 |
| PMID: | 17553978 |
| Database: | MEDLINE |
Journal Article; Research Support, N.I.H., Extramural; Validation Study