RNA uridylation and decay in plants.
| Title: | RNA uridylation and decay in plants. |
|---|---|
| Authors: | de Almeida C; Institut de biologie moléculaire des plantes (IBMP), Centre national de la recherche scientifique (CNRS), Université de Strasbourg, 12 rue Zimmer, 67000 Strasbourg, France.; Scheer H; Institut de biologie moléculaire des plantes (IBMP), Centre national de la recherche scientifique (CNRS), Université de Strasbourg, 12 rue Zimmer, 67000 Strasbourg, France.; Gobert A; Institut de biologie moléculaire des plantes (IBMP), Centre national de la recherche scientifique (CNRS), Université de Strasbourg, 12 rue Zimmer, 67000 Strasbourg, France.; Fileccia V; Dipartimento di Scienze Agrarie Alimentari Forestali, Università degli Studi di Palermo, viale delle scienze ed. 4, Palermo 90128, Italy.; Martinelli F; Dipartimento di Scienze Agrarie Alimentari Forestali, Università degli Studi di Palermo, viale delle scienze ed. 4, Palermo 90128, Italy.; Zuber H; Institut de biologie moléculaire des plantes (IBMP), Centre national de la recherche scientifique (CNRS), Université de Strasbourg, 12 rue Zimmer, 67000 Strasbourg, France.; Gagliardi D; Institut de biologie moléculaire des plantes (IBMP), Centre national de la recherche scientifique (CNRS), Université de Strasbourg, 12 rue Zimmer, 67000 Strasbourg, France dominique.gagliardi@ibmp-cnrs.unistra.fr. |
| Source: | Philosophical transactions of the Royal Society of London. Series B, Biological sciences [Philos Trans R Soc Lond B Biol Sci] 2018 Nov 05; Vol. 373 (1762). Date of Electronic Publication: 2018 Nov 05. |
| Publication Type: | Journal Article; Research Support, Non-U.S. Gov't; Review |
| Language: | English |
| Journal Info: | Publisher: Royal Society Country of Publication: England NLM ID: 7503623 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2970 (Electronic) Linking ISSN: 09628436 NLM ISO Abbreviation: Philos Trans R Soc Lond B Biol Sci |
| Imprint Name(s): | Original Publication: London : Royal Society, 1934- |
| MeSH Terms: | Plants/*genetics ; RNA/*genetics ; RNA Stability/*genetics ; Uridine/*genetics; Arabidopsis/genetics ; Arabidopsis/metabolism ; Chlamydomonas reinhardtii/genetics ; Chlamydomonas reinhardtii/metabolism ; Plants/metabolism ; Uridine/metabolism ; RNA Interference |
| Abstract: | RNA uridylation consists of the untemplated addition of uridines at the 3' extremity of an RNA molecule. RNA uridylation is catalysed by terminal uridylyltransferases (TUTases), which form a subgroup of the terminal nucleotidyltransferase family, to which poly(A) polymerases also belong. The key role of RNA uridylation is to regulate RNA degradation in a variety of eukaryotes, including fission yeast, plants and animals. In plants, RNA uridylation has been mostly studied in two model species, the green algae Chlamydomonas reinhardtii and the flowering plant Arabidopsis thaliana Plant TUTases target a variety of RNA substrates, differing in size and function. These RNA substrates include microRNAs (miRNAs), small interfering silencing RNAs (siRNAs), ribosomal RNAs (rRNAs), messenger RNAs (mRNAs) and mRNA fragments generated during post-transcriptional gene silencing. Viral RNAs can also get uridylated during plant infection. We describe here the evolutionary history of plant TUTases and we summarize the diverse molecular functions of uridylation during RNA degradation processes in plants. We also outline key points of future research.This article is part of the theme issue '5' and 3' modifications controlling RNA degradation'.; (© 2018 The Author(s).) |
| References: | Science. 2005 Feb 11;307(5711):932-5. (PMID: 15705854); New Phytol. 2017 Dec;216(4):1002-1017. (PMID: 29048752); Mol Cell. 2014 Mar 20;53(6):1044-52. (PMID: 24582499); Nucleic Acids Res. 2006 Jan 1;34(Database issue):D731-5. (PMID: 16381968); Curr Biol. 2012 Apr 24;22(8):689-94. (PMID: 22464194); RNA Biol. 2016 Nov;13(11):1078-1083. (PMID: 27715485); J Biol Chem. 2013 Jul 12;288(28):20723-33. (PMID: 23709223); PLoS One. 2009 Nov 26;4(11):e8082. (PMID: 19956626); RNA. 2007 Dec;13(12):2356-65. (PMID: 17942740); Gene. 2017 Sep 10;628:93-102. (PMID: 28676446); PLoS Biol. 2005 Jun;3(6):e189. (PMID: 15828860); Mol Cell. 2004 Jul 23;15(2):173-83. (PMID: 15260969); Nucleic Acids Res. 2016 Jul 8;44(W1):W242-5. (PMID: 27095192); Plant Physiol. 2010 Nov;154(3):1335-46. (PMID: 20805329); Nucleic Acids Res. 2010 Sep;38(17):5844-50. (PMID: 20448024); Plant Cell. 2013 Jul;25(7):2417-28. (PMID: 23839787); Science. 2008 Sep 12;321(5895):1490-2. (PMID: 18787168); Proc Natl Acad Sci U S A. 2018 Jul 31;115(31):8037-8042. (PMID: 30012624); RNA. 2007 Nov;13(11):1834-49. (PMID: 17872511); Curr Biol. 2005 Aug 23;15(16):1501-7. (PMID: 16111943); Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6365-70. (PMID: 24733911); Science. 2006 Dec 22;314(5807):1893. (PMID: 17185594); Trends Cell Biol. 2015 Nov;25(11):651-665. (PMID: 26437588); Nucleic Acids Res. 2017 Dec 15;45(22):12963-12973. (PMID: 29244187); J Exp Bot. 2007;58(15-16):4083-93. (PMID: 18182422); Plant J. 2012 Aug;71(3):492-502. (PMID: 22443345); Cell Res. 2014 Apr;24(4):497-500. (PMID: 24513854); Elife. 2017 May 02;6:. (PMID: 28463111); RNA. 2007 Jun;13(6):860-7. (PMID: 17449726); Science. 2004 Nov 5;306(5698):997. (PMID: 15528436); Sci Rep. 2016 Jul 21;6:30242. (PMID: 27440378); Nucleic Acids Res. 2016 Dec 1;44(21):10437-10453. (PMID: 27431325); Nucleic Acids Res. 2015 Dec 15;43(22):10975-88. (PMID: 26464441); Mol Cell Biol. 2012 Jul;32(13):2585-95. (PMID: 22547684); Trends Genet. 2016 Oct;32(10):607-619. (PMID: 27592415); PLoS Genet. 2015 Aug 25;11(8):e1005474. (PMID: 26305463); Nat Commun. 2017 Sep 20;8(1):619. (PMID: 28931820); Mol Cell Biol. 2010 Jan;30(2):460-9. (PMID: 19901075); PLoS Genet. 2015 Apr 30;11(4):e1005091. (PMID: 25928341); Genome Biol. 2017 Aug 23;18(1):158. (PMID: 28835265); Nat Struct Mol Biol. 2009 Jun;16(6):616-23. (PMID: 19430462); Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. (PMID: 18424797); EMBO J. 2013 Jul 3;32(13):1842-54. (PMID: 23503588); Plant J. 2014 Mar;77(5):688-99. (PMID: 24372773); Trends Plant Sci. 2009 Sep;14(9):497-504. (PMID: 19716749); EMBO J. 2016 Oct 17;35(20):2179-2191. (PMID: 27647875); Plant J. 2009 Jul;59(1):88-99. (PMID: 19309454); Cell. 2005 Jun 3;121(5):713-24. (PMID: 15935758); Philos Trans R Soc Lond B Biol Sci. 2018 Nov 5;373(1762):. (PMID: 30397099); Cell Rep. 2016 Mar 22;14(11):2707-17. (PMID: 26972004); PLoS One. 2007 Aug 08;2(8):e718. (PMID: 17684564); Cell Rep. 2013 Oct 31;5(2):283-91. (PMID: 24139796); Cell. 2014 Dec 4;159(6):1365-76. (PMID: 25480299); EMBO J. 2016 Nov 15;35(22):2417-2434. (PMID: 27729457); Nat Cell Biol. 2009 Sep;11(9):1157-63. (PMID: 19701194); Mol Cell. 2011 Aug 19;43(4):624-37. (PMID: 21855801); Nat Rev Mol Cell Biol. 2013 Oct;14(10):643-53. (PMID: 23989958); Front Plant Sci. 2018 Oct 09;9:1438. (PMID: 30364210); Biochem Soc Trans. 2010 Aug;38(4):1150-3. (PMID: 20659020); Plant Physiol. 2016 Aug;171(4):2294-316. (PMID: 27288366); Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):654-65. (PMID: 23385389); Plant J. 2015 Sep;83(6):991-1004. (PMID: 26216451); Nucleic Acids Res. 2009 Apr;37(6):1878-85. (PMID: 19188256); Sci Rep. 2016 May 06;6:25454. (PMID: 27151171); Nucleic Acids Res. 2006 Jan 30;34(2):667-75. (PMID: 16449203); Plant J. 2016 Nov;88(4):570-583. (PMID: 27447095); RNA. 2007 Jul;13(7):998-1016. (PMID: 17513695); Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3906-11. (PMID: 20142471); Nucleic Acids Res. 2012 Jan;40(Database issue):D1178-86. (PMID: 22110026); RNA. 2016 Jun;22(6):822-9. (PMID: 27048146); PLoS Biol. 2017 Feb 23;15(2):e2001272. (PMID: 28231321); BMC Genomics. 2008 May 14;9:220. (PMID: 18479511); Wiley Interdiscip Rev RNA. 2018 Jan;9(1):. (PMID: 28984054); Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):13994-9. (PMID: 23918356); Biochim Biophys Acta. 2016 Dec;1863(12):3125-3147. (PMID: 27713097); BMC Bioinformatics. 2013 May 13;14:158. (PMID: 23668630); Nucleic Acids Res. 2009 Jan;37(Database issue):D380-6. (PMID: 19036790); Nucleic Acids Res. 2013 Aug;41(14):7115-27. (PMID: 23748567); Curr Biol. 2012 Apr 24;22(8):695-700. (PMID: 22464191); Cell. 2005 Jun 3;121(5):725-37. (PMID: 15935759); Syst Biol. 2006 Aug;55(4):539-52. (PMID: 16785212); RNA. 2005 Apr;11(4):459-69. (PMID: 15703439); Philos Trans R Soc Lond B Biol Sci. 2018 Nov 5;373(1762):. (PMID: 30397107); Biomed Res Int. 2015;2015:968127. (PMID: 26078976); Nucleic Acids Res. 2004 Mar 19;32(5):1792-7. (PMID: 15034147); Nucleic Acids Res. 2016 Sep 6;44(15):7395-405. (PMID: 27207877); Syst Biol. 2010 May;59(3):307-21. (PMID: 20525638); PLoS Genet. 2015 Apr 30;11(4):e1005119. (PMID: 25928405) |
| Contributed Indexing: | Keywords: RNA decay; RNA degradation; mRNAs; terminal nucleotidyltransferase; uridylation |
| Molecular Sequence: | figshare 10.6084/m9.figshare.c.4244939 |
| Substance Nomenclature: | 63231-63-0 (RNA); WHI7HQ7H85 (Uridine) |
| Entry Date(s): | Date Created: 20181107 Date Completed: 20190826 Latest Revision: 20240607 |
| Update Code: | 20260130 |
| PubMed Central ID: | PMC6232585 |
| DOI: | 10.1098/rstb.2018.0163 |
| PMID: | 30397100 |
| Database: | MEDLINE |
Journal Article; Research Support, Non-U.S. Gov't; Review