Building consensus around the assessment and interpretation of Symbiodiniaceae diversity.
| Title: | Building consensus around the assessment and interpretation of Symbiodiniaceae diversity. |
|---|---|
| Authors: | Davies SW; Department of Biology, Boston University, Boston, MA, United States.; Gamache MH; Department of Integrative Biology, University of South Florida, Tampa, FL, United States.; Howe-Kerr LI; Department of BioSciences, Rice University, Houston, TX, United States.; Kriefall NG; Department of Biology, Boston University, Boston, MA, United States.; Baker AC; Rosenstiel School of Marine, Atmospheric, and Earth Science, University of Miami, Miami, FL, United States.; Banaszak AT; Unidad Académica de Sistemas Arrecifales, Universidad Nacional Autónoma de México, Puerto Morelos, Mexico.; Bay LK; Australian Institute of Marine Science, Townsville, Australia.; Bellantuono AJ; Department of Biological Sciences, Florida International University, Miami, FL, United States.; Bhattacharya D; Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ, United States.; Chan CX; Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, Australia.; Claar DC; Nearshore Habitat Program, Washington State Department of Natural Resources, Olympia, WA, USA.; Coffroth MA; Department of Geology, University at Buffalo, Buffalo, NY, United States.; Cunning R; Daniel P. Haerther Center for Conservation and Research, John G. Shedd Aquarium, Chicago, IL, United States.; Davy SK; School of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand.; Del Campo J; Institut de Biologia Evolutiva (CSIC - Universitat Pompeu Fabra), Barcelona, Catalonia, Spain.; Díaz-Almeyda EM; Department of Natural Sciences, New College of Florida, Sarasota, FL, United States.; Frommlet JC; Centre for Environmental and Marine Studies, Department of Biology, University of Aveiro, Campus Universitário de Santiago, Aveiro, Portugal.; Fuess LE; Department of Biology, Texas State University, San Marcos, TX, United States.; González-Pech RA; Department of Integrative Biology, University of South Florida, Tampa, FL, United States.; Department of Biology, Pennsylvania State University, State College, PA, United States.; Goulet TL; Department of Biology, University of Mississippi, University, MS, United States.; Hoadley KD; Department of Biological Sciences, University of Alabama-Tuscaloosa, Tuscaloosa, AL, United States.; Howells EJ; National Marine Science Centre, Faculty of Science and Engineering, Southern Cross University, Coffs Harbour, NSW, Australia.; Hume BCC; Department of Biology, University of Konstanz, Konstanz, Germany.; Kemp DW; Department of Biology, University of Alabama-Birmingham, Birmingham, Al, United States.; Kenkel CD; Department of Biological Sciences, University of Southern California, Los Angeles, CA, United States.; Kitchen SA; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, United States.; LaJeunesse TC; Department of Biology, Pennsylvania State University, University Park, PA, United States.; Lin S; Department of Marine Sciences, University of Connecticut, Mansfield, CT, United States.; McIlroy SE; Swire Institute of Marine Science, School of Biological Sciences, The University of Hong Kong, Pok Fu Lam, Hong Kong.; McMinds R; Center for Global Health and Infectious Disease Research, University of South Florida, Tampa, FL, United States.; Nitschke MR; Australian Institute of Marine Science, Townsville, Australia.; Oakley CA; School of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand.; Peixoto RS; Red Sea Research Center (RSRC), Division of Biological and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.; Prada C; Department of Biological Sciences, University of Rhode Island, Kingston, RI, United States.; Putnam HM; Department of Biological Sciences, University of Rhode Island, Kingston, RI, United States.; Quigley K; Minderoo Foundation, Perth, WA, Australia.; Reich HG; Department of Biological Sciences, University of Rhode Island, Kingston, RI, United States.; Reimer JD; Department of Biology, Chemistry and Marine Sciences, Faculty of Science, University of the Ryukyus, Nishihara, Okinawa, Japan.; Rodriguez-Lanetty M; Department of Biological Sciences, Florida International University, Miami, FL, United States.; Rosales SM; The Cooperative Institute For Marine and Atmospheric Studies, Miami, FL, United States.; Saad OS; Department of Biological Oceanography, Red Sea University, Port-Sudan, Sudan.; Sampayo EM; School of Biological Sciences, The University of Queensland, St. Lucia, QLD, Australia.; Santos SR; Department of Biological Sciences, University at Buffalo, Buffalo, NY, United States.; Shoguchi E; Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan.; Smith EG; School of Life Sciences, University of Warwick, Coventry, UK.; Stat M; School of Environmental and Life Sciences, University of Newcastle, Callaghan, NSW, Australia.; Stephens TG; Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ, United States.; Strader ME; Department of Biology, Texas A&M University, College Station, TX, United States.; Suggett DJ; Red Sea Research Center (RSRC), Division of Biological and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.; Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, Australia.; Swain TD; Department of Marine and Environmental Science, Nova Southeastern University, Dania Beach, FL, United States.; Tran C; Department of Biology, University of San Diego, San Diego, CA, United States.; Traylor-Knowles N; Rosenstiel School of Marine, Atmospheric, and Earth Science, University of Miami, Miami, FL, United States.; Voolstra CR; Department of Biology, University of Konstanz, Konstanz, Germany.; Warner ME; School of Marine Science and Policy, University of Delaware, Lewes, DE, United States.; Weis VM; Department of Integrative Biology, Oregon State University, Corvallis, OR, United States.; Wright RM; Department of Biological Sciences, Southern Methodist University, Dallas, TX, United States.; Xiang T; School of Life Sciences, University of Warwick, Coventry, UK.; Yamashita H; Fisheries Technology Institute, Japan Fisheries Research and Education Agency, Ishigaki, Okinawa, Japan.; Ziegler M; Department of Animal Ecology & Systematics, Justus Liebig University Giessen (Germany), Giessen, Germany.; Correa AMS; Department of BioSciences, Rice University, Houston, TX, United States.; Parkinson JE; Department of Integrative Biology, University of South Florida, Tampa, FL, United States. |
| Source: | PeerJ [PeerJ] 2023 May 02; Vol. 11, pp. e15023. Date of Electronic Publication: 2023 May 02 (Print Publication: 2023). |
| Publication Type: | Journal Article |
| Language: | English |
| Journal Info: | Publisher: PeerJ Inc Country of Publication: United States NLM ID: 101603425 Publication Model: eCollection Cited Medium: Internet ISSN: 2167-8359 (Electronic) Linking ISSN: 21678359 NLM ISO Abbreviation: PeerJ Subsets: MEDLINE |
| Imprint Name(s): | Original Publication: Corte Madera, CA : PeerJ Inc. |
| MeSH Terms: | Dinoflagellida*/classification ; Dinoflagellida*/genetics ; Genetic Variation* ; Coral Reefs*; Phylogeny ; Consensus ; Anthozoa ; Symbiosis |
| Abstract: | Within microeukaryotes, genetic variation and functional variation sometimes accumulate more quickly than morphological differences. To understand the evolutionary history and ecology of such lineages, it is key to examine diversity at multiple levels of organization. In the dinoflagellate family Symbiodiniaceae, which can form endosymbioses with cnidarians (e.g., corals, octocorals, sea anemones, jellyfish), other marine invertebrates (e.g., sponges, molluscs, flatworms), and protists (e.g., foraminifera), molecular data have been used extensively over the past three decades to describe phenotypes and to make evolutionary and ecological inferences. Despite advances in Symbiodiniaceae genomics, a lack of consensus among researchers with respect to interpreting genetic data has slowed progress in the field and acted as a barrier to reconciling observations. Here, we identify key challenges regarding the assessment and interpretation of Symbiodiniaceae genetic diversity across three levels: species, populations, and communities. We summarize areas of agreement and highlight techniques and approaches that are broadly accepted. In areas where debate remains, we identify unresolved issues and discuss technologies and approaches that can help to fill knowledge gaps related to genetic and phenotypic diversity. We also discuss ways to stimulate progress, in particular by fostering a more inclusive and collaborative research community. We hope that this perspective will inspire and accelerate coral reef science by serving as a resource to those designing experiments, publishing research, and applying for funding related to Symbiodiniaceae and their symbiotic partnerships.; (© 2023 Davies et al.) |
| Competing Interests: | Anastazia T. Banaszak and James Davis Reimer are Academic Editors for PeerJ. |
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| Contributed Indexing: | Keywords: Cnidarian; Collaborative; Community; Coral; Genetic diversity; ITS2; Population; Species; Symbiodiniaceae; Symbiosis |
| Entry Date(s): | Date Created: 20230508 Date Completed: 20230509 Latest Revision: 20250801 |
| Update Code: | 20260130 |
| PubMed Central ID: | PMC10162043 |
| DOI: | 10.7717/peerj.15023 |
| PMID: | 37151292 |
| Database: | MEDLINE |
Journal Article