Phylogenomic analyses provide insights into primate evolution.
| Title: | Phylogenomic analyses provide insights into primate evolution. |
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| Authors: | Shao Y; State Key Laboratory of Genetic Resources and Evolution, Kunming Natural History Museum of Zoology, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650201, China.; Zhou L; Center of Evolutionary & Organismal Biology, and Women's Hospital at Zhejiang University School of Medicine, Hangzhou 310058, China.; Li F; Section for Ecology and Evolution, Department of Biology, University of Copenhagen, DK-2100 Copenhagen, Denmark.; Institute of Animal Sex and Development, ZhejiangWanli University, Ningbo 315100, China.; Zhao L; Shaanxi Key Laboratory for Animal Conservation, College of Life Sciences, Northwest University, Xi'an 710069, China.; Zhang BL; State Key Laboratory of Genetic Resources and Evolution, Kunming Natural History Museum of Zoology, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650201, China.; Shao F; Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Southwest University School of Life Sciences, Chongqing 400715, China.; Chen JW; BGI-Shenzhen, Shenzhen 518083, China.; Chen CY; School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710072, China.; Bi X; Center of Evolutionary & Organismal Biology, and Women's Hospital at Zhejiang University School of Medicine, Hangzhou 310058, China.; Zhuang XL; State Key Laboratory of Genetic Resources and Evolution, Kunming Natural History Museum of Zoology, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650201, China.; Kunming College of Life Science, University of the Chinese Academy of Sciences, Kunming 650204, China.; Zhu HL; BGI-Shenzhen, Shenzhen 518083, China.; Hu J; Grandomics Biosciences, Beijing 102206, China.; Sun Z; Grandomics Biosciences, Beijing 102206, China.; Li X; Grandomics Biosciences, Beijing 102206, China.; Wang D; Grandomics Biosciences, Beijing 102206, China.; Rivas-González I; Bioinformatics Research Centre, Aarhus University, DK-8000 Aarhus, Denmark.; Wang S; State Key Laboratory of Genetic Resources and Evolution, Kunming Natural History Museum of Zoology, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650201, China.; Wang YM; State Key Laboratory of Genetic Resources and Evolution, Kunming Natural History Museum of Zoology, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650201, China.; Chen W; Guangzhou Zoo & Guangzhou Wildlife Research Center, Guangzhou 510070, China.; Li G; College of Life Sciences, Shaanxi Normal University, Xi'an 710119, China.; Lu HM; School of Life Sciences, Northwestern Polytechnical University, Xi'an 710072, China.; Liu Y; College of Life Sciences, Shaanxi Normal University, Xi'an 710119, China.; Kuderna LFK; Institute of Evolutionary Biology (UPF-CSIC), PRBB, 08003 Barcelona, Spain.; Illumina Artificial Intelligence Laboratory, Illumina Inc, San Diego, CA 92122, USA.; Farh KK; Illumina Artificial Intelligence Laboratory, Illumina Inc, San Diego, CA 92122, USA.; Fan PF; School of Life Sciences, Sun Yat-sen University, Guangzhou, Guangdong 510275, China.; Yu L; State Key Laboratory for Conservation and Utilization of Bio-Resource in Yunnan, School of Life Sciences, Yunnan University, Kunming 650091, China.; Li M; CAS Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.; Liu ZJ; College of Life Sciences, Capital Normal University, Beijing 100048, China.; Tiley GP; Department of Biology, Duke University, Durham, NC 27708, USA.; Yoder AD; Department of Biology, Duke University, Durham, NC 27708, USA.; Roos C; Gene Bank of Primates and Primate Genetics Laboratory, German Primate Center, Leibniz Institute for Primate Research, 37077 Göttingen, Germany.; Hayakawa T; Faculty of Environmental Earth Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan.; Japan Monkey Centre, Inuyama, Aichi 484-0081, Japan.; Marques-Bonet T; Institute of Evolutionary Biology (UPF-CSIC), PRBB, 08003 Barcelona, Spain.; Catalan Institution of Research and Advanced Studies (ICREA), Passeig de Lluís Companys, 23, 08010 Barcelona, Spain.; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), 08028 Barcelona, Spain.; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, 08193 Cerdanyola del Vallès, Barcelona, Spain.; Rogers J; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Stenson PD; Institute of Medical Genetics, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK.; Cooper DN; Institute of Medical Genetics, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK.; Schierup MH; Bioinformatics Research Centre, Aarhus University, DK-8000 Aarhus, Denmark.; Yao YG; Kunming College of Life Science, University of the Chinese Academy of Sciences, Kunming 650204, China.; Key Laboratory of Animal Models and Human Disease Mechanisms of Chinese Academy of Sciences & Yunnan Province, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650201, China.; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming 650201, China.; National Resource Center for Non-Human Primates, Kunming Primate Research Center, and National Research Facility for Phenotypic & Genetic Analysis of Model Animals (Primate Facility), Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650107, China.; Zhang YP; State Key Laboratory of Genetic Resources and Evolution, Kunming Natural History Museum of Zoology, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650201, China.; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming 650201, China.; National Resource Center for Non-Human Primates, Kunming Primate Research Center, and National Research Facility for Phenotypic & Genetic Analysis of Model Animals (Primate Facility), Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650107, China.; Wang W; State Key Laboratory of Genetic Resources and Evolution, Kunming Natural History Museum of Zoology, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650201, China.; School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710072, China.; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming 650201, China.; Qi XG; Shaanxi Key Laboratory for Animal Conservation, College of Life Sciences, Northwest University, Xi'an 710069, China.; Zhang G; State Key Laboratory of Genetic Resources and Evolution, Kunming Natural History Museum of Zoology, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650201, China.; Center of Evolutionary & Organismal Biology, and Women's Hospital at Zhejiang University School of Medicine, Hangzhou 310058, China.; Section for Ecology and Evolution, Department of Biology, University of Copenhagen, DK-2100 Copenhagen, Denmark.; Liangzhu Laboratory, Zhejiang University Medical Center, Hangzhou 311121, China.; Wu DD; State Key Laboratory of Genetic Resources and Evolution, Kunming Natural History Museum of Zoology, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650201, China.; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming 650201, China.; National Resource Center for Non-Human Primates, Kunming Primate Research Center, and National Research Facility for Phenotypic & Genetic Analysis of Model Animals (Primate Facility), Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650107, China.; KIZ-CUHK Joint Laboratory of Bioresources and Molecular Research in Common Diseases, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650204, China. |
| Source: | Science (New York, N.Y.) [Science] 2023 Jun 02; Vol. 380 (6648), pp. 913-924. Date of Electronic Publication: 2023 Jun 01. |
| Publication Type: | Journal Article |
| Language: | English |
| Journal Info: | Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE |
| Imprint Name(s): | Publication: : Washington, DC : American Association for the Advancement of Science; Original Publication: New York, N.Y. : [s.n.] 1880- |
| MeSH Terms: | Primates*/anatomy & histology ; Primates*/classification ; Primates*/genetics ; Evolution, Molecular*; Brain/anatomy & histology ; Animals ; Humans ; Genome ; Genomics ; Phylogeny ; Gene Rearrangement |
| Abstract: | Comparative analysis of primate genomes within a phylogenetic context is essential for understanding the evolution of human genetic architecture and primate diversity. We present such a study of 50 primate species spanning 38 genera and 14 families, including 27 genomes first reported here, with many from previously less well represented groups, the New World monkeys and the Strepsirrhini. Our analyses reveal heterogeneous rates of genomic rearrangement and gene evolution across primate lineages. Thousands of genes under positive selection in different lineages play roles in the nervous, skeletal, and digestive systems and may have contributed to primate innovations and adaptations. Our study reveals that many key genomic innovations occurred in the Simiiformes ancestral node and may have had an impact on the adaptive radiation of the Simiiformes and human evolution. |
| Entry Date(s): | Date Created: 20230601 Date Completed: 20230614 Latest Revision: 20230614 |
| Update Code: | 20260130 |
| DOI: | 10.1126/science.abn6919 |
| PMID: | 37262173 |
| Database: | MEDLINE |
Journal Article