| Title: |
Example of dataset extracted using vCircTrappist. |
| Authors: |
Alexis S. Chasseur; Maxime Bellefroid; Mathilde Galais; Meijiao Gong; Pierre Lombard; Sarah Mathieu; Amandine Pecquet; Estelle Plant; Camille Ponsard; Laure Vreux; Carlo Yague-Sanz; Benjamin G. Dewals; Nicolas A. Gillet; Benoît Muylkens; Carine M. Van Lint; Damien Coupeau |
| Publication Year: |
2025 |
| Subject Terms: |
Medicine; Microbiology; Genetics; Molecular Biology; Evolutionary Biology; Immunology; Infectious Diseases; Virology; Biological Sciences not elsewhere classified; +non%22">xlink "> non; unconventional splicing mechanisms; sanger sequencings validated; recent attention focused; obtained novel insights; initially anticipated due; identify backsplicing events; human pathogens belonging; existing datasets encompassing; conserved eukaryotic patterns; coding rnas play; viral infection cycles; viral genomes include; unique viral characteristics; rna sequencing data; developed bioinformatic tool; various viral families; bioinformatic pipeline tailored; families |
| Description: |
This example displays the data obtained for MDV, as in Figure 1 and S7E. The three first columns represent the backsplice junction and the backsplice sites. The « Count » column represent the raw number of reads mapping the backsplice junction without normalization. The Sense_score column is calculated based on the strand which is covered by the reads mapping the backsplice junction. The U2_score is calculated based on the distance of the backsplicing site from a canonical splicing site. The 5’ and 3’ position are the positions of the splicing sites and they determine the Max_CircRNA_Size. The « Colocalized Gene » column requires a completed GFF file to determine the colocalizing genes. The « Longest Common Kmer » was identified comparing the backsplice sites and the « Common Sequences » were extracted accordingly. The « Chromosome » is the viral genome reference on which the backsplice junction was identified. The identifiers of the reads are available in the SAM alignment file. (CSV) |
| Document Type: |
dataset |
| Language: |
unknown |
| Relation: |
https://figshare.com/articles/dataset/Example_of_dataset_extracted_using_vCircTrappist_/30105332 |
| DOI: |
10.1371/journal.ppat.1013448.s009 |
| Availability: |
https://doi.org/10.1371/journal.ppat.1013448.s009; https://figshare.com/articles/dataset/Example_of_dataset_extracted_using_vCircTrappist_/30105332 |
| Rights: |
CC BY 4.0 |
| Accession Number: |
edsbas.450AD875 |
| Database: |
BASE |