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MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration

Title: MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration
Authors: Zdouc MM; Blin K; Louwen NLL; Navarro J; Loureiro C; Bader CD; Bailey CB; Barra L; Booth TJ; Bozhuyuk KAJ; Cediel-Becerra JDD; Charlop-Powers Z; Chevrette MG; Chooi YH; D'Agostino PM; de Rond T; Del Pup E; Duncan KR; Gu W; Hanif N; Helfrich EJN; Jenner M; Katsuyama Y; Korenskaia A; Krug D; Libis V; Lund GA; Mantri S; Morgan KD; Owen C; Phan C-S; Philmus B; Reitz ZL; Robinson SL; Singh KS; Teufel R; Tong Y; Tugizimana F; Ulanova D; Winter JM; Aguilar C; Akiyama DY; Al-Salihi SAA; Alanjary M; Alberti F; Aleti G; Alharthi SA; Arias Rojo MY; Arishi AA; Augustijn HE; Avalon NE; Avelar-Rivas JA; Axt KK; Barbieri HB; Barbosa JCJ; Barboza Segato LG; Barrett SE; Baunach M; Beemelmanns C; Beqaj D; Berger T; Bernaldo-Aguero J; Bettenbuhl SM; Bielinski VA; Biermann F; Borges RM; Borriss R; Breitenbach M; Bretscher KM; Brigham MW; Buedenbender L; Bulcock BW; Cano-Prieto C; Capela J; Carrion VJ; Carter RS; Castelo-Branco R; Castro-Falcon G; Chagas FO; Charria-Giron E; Chaudhri AA; Chaudhry V; Choi H; Choi Y; Choupannejad R; Chromy J; Chue Donahey MS; Collemare J; Connolly JA; Creamer KE; Crusemann M; Cruz AA; Cumsille A; Dallery J-F; Damas-Ramos LC; Damiani T; de Kruijff M; Delgado Martin B; Della Sala G; Dillen J; Doering DT; Dommaraju SR; Durusu S; Egbert S; Ellerhorst M; Faussurier B; Fetter A; Feuermann M; Fewer DP; Foldi J; Frediansyah A; Garza EA; Gavriilidou A; Gentile A; Gerke J; Gerstmans H; Gomez-Escribano JP; Gonzalez-Salazar LA; Grayson NE; Greco C; Gris Gomez JE; Guerra S; Guerrero Flores S; Gurevich A; Gutierrez-Garcia K; Hart L; Haslinger K; He B; Hebra T; Hemmann JL; Hindra H; Hoing L; Holland DC; Holme JE; Horch T; Hrab P; Hu J; Huynh T-H; Hwang J-Y; Iacovelli R; Iftime D; Iorio M; Jayachandran S; Jeong E; Jing J; Jung JJ; Kakumu Y; Kalkreuter E; Kang KB; Kang S; Kim W; Kim GJ; Kim H; Kim HU; Klapper M; Koetsier RA; Kollten C; Kovacs AT; Kriukova Y; Kubach N; Kunjapur AM; Kushnareva AK; Kust A; Lamber J; Larralde M; Larsen NJ; Launay AP; Le N-T-H; Lebeer S; Lee BT; Lee K; Lev KL; Li S-M; Li Y-X; Licona-Cassani C; Lien A; Liu J; Lopez JAV; Machushynets NV; Macias MI; Mahmud T; Maleckis M; Martinez-Martinez AM; Mast Y; Maximo MF; McBride CM; McLellan RM; Mehta Bhatt K; Melkonian C; Merrild A; Metsa-Ketela M; Mitchell DA; Muller AV; Nguyen G-S; Nguyen HT; Niedermeyer THJ; O'Hare JH; Ossowicki A; Ostash BO; Otani H; Padva L; Paliyal S; Pan X; Panghal M; Parade DS; Park J; Parra J; Rubio MP; Pham HT; Pidot SJ; Piel J; Pourmohsenin B; Rakhmanov M; Ramesh S; Rasmussen MH; Rego A; Reher R; Rice AJ; Rigolet A; Romero-Otero A; Rosas-Becerra LR; Rosiles PY; Rutz A; Ryu B; Sahadeo L-A; Saldanha M; Salvi L; Sanchez-Carvajal E; Santos-Medellin C; Sbaraini N; Schoellhorn SM; Schumm C; Sehnal L; Selem N; Shah AD; Shishido TK; Sieber S; Silviani V; Singh G; Singh H; Sokolova N; Sonnenschein EC; Sosio M; Sowa ST; Steffen K; Stegmann E; Streiff AB; Struder A; Surup F; Svenningsen T; Sweeney D; Szenei J; Tagirdzhanov A; Tan B; Tarnowski MJ; Terlouw BR; Rey T; Thome NU; Torres Ortega LR; Torring T; Trindade M; Truman AW; Tvilum M; Udwary DW; Ulbricht C; Vader L; van Wezel GP; Walmsley M; Warnasinghe R; Weddeling HG; Weir ANM; Williams K; Williams SE; Witte TE; Wood Rocca SM; Yamada K; Yang D; Yu J; Zhou Z; Ziemert N; Zimmer L; Zimmermann A; Zimmermann C; van der Hooft JJJ; Linington RG; Weber T; Medema MH
Source: Nucleic Acids Research, 6 January 2025
Publisher Information: Oxford University Press
Publication Year: 2025
Collection: Newcastle University Library ePrints Service
Description: © The Author(s) 2024. Specialized or secondary metabolites are small molecules of biological origin, often showing potent biological activities with applications in agriculture, engineering and medicine. Usually, the biosynthesis of these natural products is governed by sets of co-regulated and physically clustered genes known as biosynthetic gene clusters (BGCs). To share information about BGCs in a standardized and machine-readable way, the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard and repository was initiated in 2015. Since its conception, MIBiG has been regularly updated to expand data coverage and remain up to date with innovations in natural product research. Here, we describe MIBiG version 4.0, an extensive update to the data repository and the underlying data standard. In a massive community annotation effort, 267 contributors performed 8304 edits, creating 557 new entries and modifying 590 existing entries, resulting in a new total of 3059 curated entries in MIBiG. Particular attention was paid to ensuring high data quality, with automated data validation using a newly developed custom submission portal prototype, paired with a novel peer-reviewing model. MIBiG 4.0 also takes steps towards a rolling release model and a broader involvement of the scientific community. MIBiG 4.0 is accessible online at https://mibig.secondarymetabolites.org/.
Document Type: article in journal/newspaper
Language: unknown
Relation: https://eprints.ncl.ac.uk/303713
Availability: https://eprints.ncl.ac.uk/303713
Rights: https://creativecommons.org/licenses/by/4.0/
Accession Number: edsbas.5CEE450
Database: BASE