Maximum likelihood phylogenetic tree from aligned SNP output from parsnp.
| Title: | Maximum likelihood phylogenetic tree from aligned SNP output from parsnp. |
|---|---|
| Authors: | Joanne L. Allen; Rhys N. Bushell; Amir H. Noormohammadi; Pam Whiteley; Susan A. Ballard; Mary Valcanis; Glenn F. Browning; Marc S. Marenda |
| Publication Year: | 2025 |
| Collection: | Erasmus University Rotterdam (EUR): Figshare |
| Subject Terms: | Microbiology; Genetics; Ecology; Environmental Sciences not elsewhere classified; Biological Sciences not elsewhere classified; study greatly expands; g .; st8; comparative genome analysis; 3 %) australian; pasteurella canis |
| Description: | The tree was constructed with FastTreeDbl with 100 bootstraps and the GTR substitution model. The tree is mid-rooted, and represents 330 genomes and 77950 polymorphic positions. The color strips, starting from the outer strip, indicate the host species, LPS type and capsule type, respectively. The reference genome for Pasteurella multocida (PM70) is indicated in red. Branch thickness represents bootstrap values. |
| Document Type: | still image |
| Language: | unknown |
| Relation: | https://figshare.com/articles/figure/Maximum_likelihood_phylogenetic_tree_from_aligned_SNP_output_from_parsnp_/29846038 |
| DOI: | 10.1371/journal.pone.0329807.g003 |
| Availability: | https://doi.org/10.1371/journal.pone.0329807.g003; https://figshare.com/articles/figure/Maximum_likelihood_phylogenetic_tree_from_aligned_SNP_output_from_parsnp_/29846038 |
| Rights: | CC BY 4.0 |
| Accession Number: | edsbas.70F73EE5 |
| Database: | BASE |