| Title: |
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities ; Nucleic Acids Research |
| Authors: |
Davis, James J.; Wattam, Alice R.; Aziz, Ramy K.; Brettin, Thomas; Butler, Ralph; Butler, Rory M.; Chlenski, Philippe; Conrad, Neal; Dickerman, Allan W.; Dietrich, Emily M.; Gabbard, Joseph L.; Gerdes, Svetlana; Guard, Andrew; Kenyon, Ronald W.; Machi, Dustin; Mao, Chunhong; Murphy-Olson, Daniel E.; Nguyen, Marcus; Nordberg, Eric K.; Olsen, Gary J.; Olson, Robert D.; Overbeek, Jamie C.; Overbeek, Ross; Parrello, Bruce; Pusch, Gordon D.; Shukla, Maulik; Thomas, Chris; VanOeffelen, Margo; Vonstein, Veronika; Warren, Andrew S.; Xia, Fangfang; Xie, Dawen; Yoo, Hyunseung; Stevens, Rick L. |
| Contributors: |
Industrial and Systems Engineering |
| Publication Year: |
2020 |
| Collection: |
VTechWorks (VirginiaTech) |
| Description: |
The PathoSystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious Diseases (https://www.patricbrc.org). PATRIC supports bioinformatic analyses of all bacteria with a special emphasis on pathogens, offering a rich comparative analysis environment that provides users with access to over 250 000 uniformly annotated and publicly available genomes with curated metadata. PATRIC offers web-based visualization and comparative analysis tools, a private workspace in which users can analyze their own data in the context of the public collections, services that streamline complex bioinformatic workflows and command-line tools for bulk data analysis. Over the past several years, as genomic and other omics-related experiments have become more cost-effective and widespread, we have observed considerable growth in the usage of and demand for easy-to-use, publicly available bioinformatic tools and services. Here we report the recent updates to the PATRIC resource, including new web-based comparative analysis tools, eight new services and the release of a command-line interface to access, query and analyze data. ; National Institute of Allergy and Infectious Diseases (NIAID)United States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute of Allergy & Infectious Diseases (NIAID) [HHSN272201400027C]; NIAIDUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute of Allergy & Infectious Diseases (NIAID) ; National Institute of Allergy and Infectious Diseases (NIAID) [HHSN272201400027C to R.S.]. Funding for open access charge: NIAID. |
| Document Type: |
article in journal/newspaper; still image |
| File Description: |
application/pdf |
| Language: |
English |
| Relation: |
http://hdl.handle.net/10919/98561; https://doi.org/10.1093/nar/gkz943; 48; D1 |
| DOI: |
10.1093/nar/gkz943 |
| Availability: |
http://hdl.handle.net/10919/98561; https://doi.org/10.1093/nar/gkz943 |
| Rights: |
Creative Commons CC0 1.0 Universal Public Domain Dedication ; http://creativecommons.org/publicdomain/zero/1.0/ |
| Accession Number: |
edsbas.7EB0E611 |
| Database: |
BASE |