| Title: |
Pearson correlations for the TempO-seq Phase 1 and Phase 2 technical replicates data. |
| Authors: |
Laura J. Word; Clinton M. Willis; Richard S. Judson; Logan J. Everett; Sarah E. Davidson-Fritz; Derik E. Haggard; Bryant A. Chambers; Jesse D. Rogers; Joseph L. Bundy; Imran Shah; Nisha S. Sipes; Joshua A. Harrill |
| Publication Year: |
2025 |
| Subject Terms: |
Biochemistry; Genetics; Molecular Biology; Immunology; Developmental Biology; Cancer; Biological Sciences not elsewhere classified; transcriptomics technologies allow; different read depths; average pearson correlation; 76 &# 8211; gene ontologies annotated; cellular structure functions; pearson correlation 0; concordant expression levels; 90 – 0; 810 genes ); 290 genes within; principal component analysis; div >< p; calculating relative log; normalized expression data; seq data sets; seq rle data; seq data; ribosomal functions; ontologies associated; data acquisition; 480 genes; well correlated |
| Description: |
Each cell line was analyzed separately. (A) Representative correlation plot for the CCD-18Co cell line. The cell line is indicated above each histogram in the center diagonal plots, followed by the technical replicate number (1 through 3), and then P1 or P2 for which TempO-seq data set phase the replicate was from (P1 is TempO-seq Phase 1 and P2 is TempO-seq Phase 2). The order within the top left orange box is: Phase 1, replicates 1, 2, 3, and the order within the bottom right orange box diagonal of histograms is: Phase 2 replicates 1, 2, 3. The top left and bottom right quadrants show Pearson Correlations between technical replicates in the same data set (orange boxes). Pearson Correlations between TempO-seq Phase 1 vs Phase 2 data sets are shown in the bottom left and top right quadrants (blue boxes). (B) Pearson correlations between TempO-seq Phase 1 and Phase 2 data sets for all six overlapping cell lines. Organization and annotation of these panels is the same as described in (A). |
| Document Type: |
still image |
| Language: |
unknown |
| DOI: |
10.1371/journal.pone.0320862.g001 |
| Availability: |
https://doi.org/10.1371/journal.pone.0320862.g001; https://figshare.com/articles/figure/Pearson_correlations_for_the_TempO-seq_Phase_1_and_Phase_2_technical_replicates_data_/28995354 |
| Rights: |
CC BY 4.0 |
| Accession Number: |
edsbas.91FE04FE |
| Database: |
BASE |