| Title: |
Data Management for Health Data Reuse: Proposal of a Standard Workflow and a R Tutorial with Jupyter Notebook. |
| Authors: |
Lamer, Antoine; Al Massati, Sanae; Saint-Dizier, Chloé; Fares, Emile; Chazard, Emmanuel; Fruchart, Mathilde |
| Contributors: |
Evaluation des technologies de santé et des pratiques médicales - ULR 2694 (METRICS); Université de Lille-Centre Hospitalier Régional Universitaire CHU Lille (CHRU Lille); Institut Lillois d'Ingénierie de la Santé (ILIS); Université de Lille, Droit et Santé |
| Source: |
ISSN: 0926-9630. |
| Publisher Information: |
CCSD; IOS Press |
| Publication Year: |
2022 |
| Collection: |
LillOA (HAL Lille Open Archive, Université de Lille) |
| Subject Terms: |
Education; Data Science; Data reuse; Data management; Programming; [SDV]Life Sciences [q-bio] |
| Description: |
International audience ; The data collected in the clinical registries or by data reuse require some modifications in order to suit the research needs. Several common operations are frequently applied to select relevant patients across the cohort, combine data from multiple sources, add new variables if needed and create unique tables depending on the research purpose. We carried out a qualitative survey by conducting semi-structured interviews with 7 experts in data reuse and proposed a standard workflow for health data management. We implemented a R tutorial based on a synthetic data set using Jupyter Notebook for a better understanding of the data management workflow. |
| Document Type: |
article in journal/newspaper |
| Language: |
English |
| Relation: |
info:eu-repo/semantics/altIdentifier/pmid/36073461; PUBMED: 36073461 |
| DOI: |
10.3233/SHTI220912 |
| Availability: |
https://hal.univ-lille.fr/hal-04534266; https://hal.univ-lille.fr/hal-04534266v1/document; https://hal.univ-lille.fr/hal-04534266v1/file/SHTI-298-SHTI220912.pdf; https://doi.org/10.3233/SHTI220912 |
| Rights: |
http://creativecommons.org/licenses/by-nc/ ; info:eu-repo/semantics/OpenAccess |
| Accession Number: |
edsbas.9B6D9455 |
| Database: |
BASE |