MERFISH data for 'Intratumoral dendritic cell–CD4+ T helper cell niches enable CD8+ T cell differentiation following PD-1 blockade in hepatocellular carcinoma'
| Title: | MERFISH data for 'Intratumoral dendritic cell–CD4+ T helper cell niches enable CD8+ T cell differentiation following PD-1 blockade in hepatocellular carcinoma' |
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| Authors: | Assaf Magen; Pauline Hamon; Nathalie Fiaschi; Brian Y. Soong; Matthew D. Park; Raphaël Mattiuz; Etienne Humblin; Leanna Troncoso; Darwin D'souza; Travis Dawson; Joel Kim; Steven Hamel; Mark Buckup; Christie Chang; Alexandra Tabachnikova; Hara Schwartz; Nausicaa Malissen; Yonit Lavin; Alessandra Soares-Schanoski; Bruno Giotti; Samarth Hegde; Giorgio Ioannou; Edgar Gonzalez-Kozlova; Clotilde Hennequin; Jessica Le Berichel; Zhen Zhao; Stephen C. Ward; Isabel Fiel; Baijun Kou; Michael Dobosz; Lianjie Li; Christina Adler; Min Ni; Yi Wei; Wei Wang; Gurinder S. Atwal; Kunal Kundu; Kamil J. Cygan; Alexander M. Tsankov; Adeeb Rahman; Colles Price; Nicolas Fernandez; Jiang He; Namita T. Gupta; Seunghee Kim-Schulze; Sacha Gnjatic; Ephraim Kenigsberg; Raquel P. Deering; Myron Schwartz; Thomas U. Marron; Gavin Thurston; Alice O. Kamphorst; Miriam Merad |
| Publisher Information: | Zenodo |
| Publication Year: | 2023 |
| Collection: | Zenodo |
| Subject Terms: | MERFISH |
| Description: | MERFISH datasets for the publication "Intratumoral dendritic cell–CD4+ T helper cell niches enable CD8+ T cell differentiation following PD-1 blockade in hepatocellular carcinoma" (Nature Medicine, 2023), generated in collaboration between the Icahn School of Medicine at Mount Sinai and Vizgen. See the README.xlsx for descriptions of each dataset. Requests for code can be directed to the corresponding authors, and the code will be provided within 30 days and without restrictions. Please cite our Nature Medicine paper (https://doi.org/10.1038/s41591-023-02345-0) if you utilize these datasets. 2023-7-20: Updated to include .vzg and detected_transcripts.csv files. |
| Document Type: | article in journal/newspaper |
| Language: | English |
| Relation: | https://zenodo.org/records/8136493; oai:zenodo.org:8136493; https://doi.org/10.5281/zenodo.8136493 |
| DOI: | 10.5281/zenodo.8136493 |
| Availability: | https://doi.org/10.5281/zenodo.8136493; https://zenodo.org/records/8136493 |
| Rights: | Creative Commons Attribution 4.0 International ; cc-by-4.0 ; https://creativecommons.org/licenses/by/4.0/legalcode |
| Accession Number: | edsbas.A50EFAF4 |
| Database: | BASE |