Distribution of mobile genetic elements in 585 P. multocida genomes.
| Title: | Distribution of mobile genetic elements in 585 P. multocida genomes. |
|---|---|
| Authors: | Joanne L. Allen; Rhys N. Bushell; Amir H. Noormohammadi; Pam Whiteley; Susan A. Ballard; Mary Valcanis; Glenn F. Browning; Marc S. Marenda |
| Publication Year: | 2025 |
| Collection: | Erasmus University Rotterdam (EUR): Figshare |
| Subject Terms: | Microbiology; Genetics; Ecology; Environmental Sciences not elsewhere classified; Biological Sciences not elsewhere classified; study greatly expands; g .; st8; comparative genome analysis; 3 %) australian; pasteurella canis |
| Description: | The maximum likelihood phylogenetic tree was constructed from aligned SNPs of all genomes, after correction for recombination, using FastTreeDbl with 100 bootstraps and the GTR substitution model. The tree is mid-rooted; it represents 585 genomes and 58913 polymorphic positions. Phages were predicted with Phigaro and represented by triangles. Plasmids were predicted with PLASMe and represented by circles (Transformer evidence) or squares (BlastN evidence). Conjugative transposons were predicted by BlastN searches against the IceBerg 2.0 database and represented by stars. |
| Document Type: | still image |
| Language: | unknown |
| Relation: | https://figshare.com/articles/figure/Distribution_of_mobile_genetic_elements_in_585_i_P_multocida_i_genomes_/29846047 |
| DOI: | 10.1371/journal.pone.0329807.g006 |
| Availability: | https://doi.org/10.1371/journal.pone.0329807.g006; https://figshare.com/articles/figure/Distribution_of_mobile_genetic_elements_in_585_i_P_multocida_i_genomes_/29846047 |
| Rights: | CC BY 4.0 |
| Accession Number: | edsbas.AF09B5B3 |
| Database: | BASE |