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The power of genetic diversity in genome-wide association studies of lipids

Title: The power of genetic diversity in genome-wide association studies of lipids
Authors: SE Graham; SL Clarke; K-HH Wu; S Kanoni; GJM Zajac; S Ramdas; I Surakka; I Ntalla; S Vedantam; TW Winkler; AE Locke; E Marouli; MY Hwang; S Han; A Narita; A Choudhury; AR Bentley; K Ekoru; A Verma; B Trivedi; HC Martin; KA Hunt; Q Hui; D Klarin; X Zhu; G Thorleifsson; A Helgadottir; DF Gudbjartsson; H Holm; I Olafsson; M Akiyama; S Sakaue; C Terao; M Kanai; W Zhou; BM Brumpton; H Rasheed; SE Ruotsalainen; AS Havulinna; Y Veturi; Q Feng; EA Rosenthal; T Lingren; JA Pacheco; SA Pendergrass; J Haessler; F Giulianini; Y Bradford; JE Miller; A Campbell; K Lin; IY Millwood; G Hindy; A Rasheed; JD Faul; W Zhao; DR Weir; C Turman; H Huang; M Graff; A Mahajan; MR Brown; W Zhang; K Yu; EM Schmidt; A Pandit; S Gustafsson; X Yin; J Luan; J-H Zhao; F Matsuda; H-M Jang; K Yoon; C Medina-Gomez; A Pitsillides; JJ Hottenga; G Willemsen; AR Wood; Y Ji; Z Gao; S Haworth; RE Mitchell; JF Chai; M Aadahl; J Yao; A Manichaikul; HR Warren; J Ramirez; J Bork-Jensen; LL Kårhus; A Goel; M Sabater-Lleal; R Noordam; C Sidore; E Fiorillo; AF McDaid; P Marques-Vidal; M Wielscher; S Trompet; N Sattar; LT Møllehave; BH Thuesen; M Munz; L Zeng; J Huang; B Yang; A Poveda; A Kurbasic; C Lamina; L Forer; M Scholz; TE Galesloot; JP Bradfield; EW Daw; JM Zmuda; JS Mitchell; C Fuchsberger; H Christensen; JA Brody; MF Feitosa; MK Wojczynski; M Preuss; M Mangino; P Christofidou; N Verweij; JW Benjamins; J Engmann; RL Kember; RC Slieker; KS Lo; NR Zilhao; P Le; ME Kleber; GE Delgado; S Huo; DD Ikeda; H Iha; J Yang; J Liu; HL Leonard; J Marten; B Schmidt; M Arendt; LJ Smyth; M Cañadas-Garre; C Wang; M Nakatochi; A Wong; N Hutri-Kähönen; X Sim; R Xia; A Huerta-Chagoya; JC Fernandez-Lopez; V Lyssenko; M Ahmed; AU Jackson; MR Irvin; C Oldmeadow; H-N Kim; S Ryu; PRHJ Timmers; L Arbeeva; R Dorajoo; LA Lange; X Chai; G Prasad; L Lorés-Motta; M Pauper; J Long; X Li; E Theusch; F Takeuchi; CN Spracklen; A Loukola; S Bollepalli; SC Warner; YX Wang; WB Wei; T Nutile; D Ruggiero; YJ Sung; Y-J Hung; S Chen; F Liu; KA Kentistou; M Gorski; M Brumat; K Meidtner; LF Bielak; JA Smith; P Hebbar; A-E Farmaki; E Hofer; M Lin; C Xue; J Zhang; MP Concas; S Vaccargiu; PJ van der Most; N Pitkänen; BE Cade; J Lee; SW van der Laan; KN Chitrala; S Weiss; ME Zimmermann; JY Lee; HS Choi; M Nethander; S Freitag-Wolf; L Southam; NW Rayner; CA Wang; S-Y Lin; J-S Wang; C Couture; L-P Lyytikäinen; K Nikus; G Cuellar-Partida; H Vestergaard; B Hildalgo; O Giannakopoulou; Q Cai; MO Obura; J van Setten; K Schwander; N Terzikhan; JH Shin; RD Jackson; AP Reiner; LW Martin; Z Chen; L Li; HM Highland; KL Young; T Kawaguchi; J Thiery; JC Bis; GN Nadkarni; LJ Launer; H Li; MA Nalls; OT Raitakari; S Ichihara; SH Wild; CP Nelson; H Campbell; S Jäger; T Nabika; F Al-Mulla; H Niinikoski; PS Braund; I Kolcic; P Kovacs; T Giardoglou; T Katsuya; KF Bhatti; D de Kleijn; GJ de Borst; EK Kim; HHH Adams; MA Ikram; FW Asselbergs; AO Kraaijeveld; JWJ Beulens; X-O Shu; LS Rallidis; O Pedersen; T Hansen; P Mitchell; AW Hewitt; M Kähönen; L Pérusse; C Bouchard; A Tönjes; Y-DI Chen; CE Pennell; TA Mori; W Lieb; A Franke; C Ohlsson; D Mellström; YS Cho; H Lee; J-M Yuan; W-P Koh; SY Rhee; J-T Woo; IM Heid; KJ Stark; H Völzke; G Homuth; MK Evans; AB Zonderman; O Polasek; G Pasterkamp; IE Hoefer; S Redline; K Pahkala; AJ Oldehinkel; H Snieder; G Biino; R Schmidt; H Schmidt; YE Chen; S Bandinelli; G Dedoussis; TA Thanaraj; SLR Kardia; N Kato; MB Schulze; G Girotto; B Jung; CA Böger; PK Joshi; DA Bennett; PL De Jager; X Lu; V Mamakou; M Brown; MJ Caulfield; PB Munroe; X Guo; M Ciullo; JB Jonas; NJ Samani; J Kaprio; P Pajukanta; LS Adair; SA Bechayda; HJ de Silva; AR Wickremasinghe; RM Krauss; J-Y Wu; W Zheng; AI den Hollander; D Bharadwaj; A Correa; JG Wilson; L Lind; C-K Heng; AE Nelson; YM Golightly; JF Wilson; B Penninx; H-L Kim; J Attia; RJ Scott; DC Rao; DK Arnett; M Walker; HA Koistinen; GR Chandak; CS Yajnik; JM Mercader; T Tusié-Luna; CA Aguilar-Salinas; CG Villalpando; L Orozco; M Fornage; ES Tai; RM van Dam; T Lehtimäki; N Chaturvedi; M Yokota; DF Reilly; AJ McKnight; F Kee; K-H Jöckel; MI McCarthy; CNA Palmer; V Vitart; C Hayward; E Simonsick; CM van Duijn; F Lu; J Qu; H Hishigaki; X Lin; W März; EJ Parra; M Cruz; V Gudnason; J-C Tardif; G Lettre; LM 't Hart; PJM Elders; SM Damrauer; M Kumari; M Kivimaki; P van der Harst; TD Spector; RJF Loos; MA Province; BM Psaty; I Brandslund; PP Pramstaller; K Christensen; S Ripatti; E Widén; H Hakonarson; SFA Grant; LALM Kiemeney; J de Graaf; M Loeffler; F Kronenberg; D Gu; J Erdmann; H Schunkert; PW Franks; A Linneberg; JW Jukema; AV Khera; M Männikkö; M-R Jarvelin; Z Kutalik; F Cucca; DO Mook-Kanamori; KW van Dijk; H Watkins; DP Strachan; N Grarup; P Sever; N Poulter; JI Rotter; TM Dantoft; F Karpe; MJ Neville; NJ Timpson; C-Y Cheng; T-Y Wong; CC Khor; C Sabanayagam; A Peters; C Gieger; AT Hattersley; NL Pedersen; PKE Magnusson; DI Boomsma; EJC de Geus; LA Cupples; JBJ van Meurs; M Ghanbari; P Gordon-Larsen; W Huang; YJ Kim; Y Tabara; NJ Wareham; C Langenberg; E Zeggini; J Kuusisto; M Laakso; E Ingelsson; G Abecasis; JC Chambers; JS Kooner; PS de Vries; AC Morrison; KE North; M Daviglus; P Kraft; NG Martin; JB Whitfield; S Abbas; D Saleheen; RG Walters; MV Holmes; C Black; BH Smith; AE Justice; A Baras; JE Buring; PM Ridker; DI Chasman; C Kooperberg; W-Q Wei; GP Jarvik; B Namjou; MG Hayes; MD Ritchie; P Jousilahti; V Salomaa; K Hveem; BO Åsvold; M Kubo; Y Kamatani; Y Okada; Y Murakami; U Thorsteinsdottir; K Stefansson; Y-L Ho; JA Lynch; DJ Rader; PS Tsao; K-M Chang; K Cho; CJ O'Donnell; JM Gaziano; P Wilson; CN Rotimi; S Hazelhurst; M Ramsay; RC Trembath; DA van Heel; G Tamiya; M Yamamoto; B-J Kim; KL Mohlke; TM Frayling; JN Hirschhorn; S Kathiresan; VA Million Veteran Program; Global Lipids Genetics Consortium*; M Boehnke; P Natarajan; GM Peloso; CD Brown; AP Morris; TL Assimes; P Deloukas; YV Sun; CJ Willer
Publication Year: 2021
Collection: Erasmus University Rotterdam (EUR): Figshare
Subject Terms: Computational models; Genome-wide association studies; Preventive medicine; Risk factors
Description: Increased blood lipid levels are heritable risk factors of cardiovascular disease with varied prevalence worldwide owing to different dietary patterns and medication use1. Despite advances in prevention and treatment, in particular through reducing low-density lipoprotein cholesterol levels2, heart disease remains the leading cause of death worldwide3. Genome-wideassociation studies (GWAS) of blood lipid levels have led to important biological and clinical insights, as well as new drug targets, for cardiovascular disease. However, most previous GWAS4-23 have been conducted in European ancestry populations and may have missed genetic variants that contribute to lipid-level variation in other ancestry groups. These include differences in allele frequencies, effect sizes and linkage-disequilibrium patterns24. Here we conduct a multi-ancestry, genome-wide genetic discovery meta-analysis of lipid levels in approximately 1.65 million individuals, including 350,000 of non-European ancestries. We quantify the gain in studying non-European ancestries and provide evidence to support the expansion of recruitment of additional ancestries, even with relatively small sample sizes. We find that increasing diversity rather than studying additional individuals of European ancestry results in substantial improvements in fine-mapping functional variants and portability of polygenic prediction (evaluated in approximately 295,000 individuals from 7 ancestry groupings). Modest gains in the number of discovered loci and ancestry-specific variants were also achieved. As GWAS expand emphasis beyond the identification of genes and fundamental biology towards the use of genetic variants for preventive and precision medicine25, we anticipate that increased diversity of participants will lead to more accurate and equitable26 application of polygenic scores in clinical practice.
Document Type: article in journal/newspaper
Language: unknown
Relation: 10871/128471
Availability: https://figshare.com/articles/journal_contribution/The_power_of_genetic_diversity_in_genome-wide_association_studies_of_lipids/29784605
Rights: All rights reserved
Accession Number: edsbas.BF49FA76
Database: BASE