| Title: |
Colorectal cancer spatial transcriptomics and single-cell RNA-sequencing dataset |
| Authors: |
Millard, Nghia; Chen, Jonathan; Palshikar, Mukta; Pelka, Karin; Spurrell, Maxwell; Price, Colles; He, Jiang; Hacohen, Nir; Raychaudhuri, Soumya; Korsunsky, Ilya |
| Publisher Information: |
Zenodo |
| Publication Year: |
2025 |
| Collection: |
Zenodo |
| Description: |
Metadata and counts matrix (barcode and genes files also provided) for the colorectal cancer (CRC) spatial transcriptomics and scRNA-seq dataset utilized in the Crescrendo manuscript published by Millard et al. (2025). Batch column indicates whether cell is from scRNA-seq data or which spatial transcriptomics slice. The sample_id column indicates the sample the cell is from. The center_x and center_y columns indicate the center of the cell in space (scRNA-seq cells have 0 in these columns). The orig_publication_type indicates fine-grained cell type labels from the original publication of the CRC scRNA-seq dataset, while the cresc_publication_type column indicates the more coarse-grained cell type labels from the Crescendo publication. |
| Document Type: |
dataset |
| Language: |
unknown |
| Relation: |
https://zenodo.org/records/14602110; oai:zenodo.org:14602110; https://doi.org/10.5281/zenodo.14602110 |
| DOI: |
10.5281/zenodo.14602110 |
| Availability: |
https://doi.org/10.5281/zenodo.14602110; https://zenodo.org/records/14602110 |
| Rights: |
Creative Commons Attribution 4.0 International ; cc-by-4.0 ; https://creativecommons.org/licenses/by/4.0/legalcode |
| Accession Number: |
edsbas.C51ADBA7 |
| Database: |
BASE |