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Single cell and spatial analysis of immune-hot and immune-cold tumours identifies fibroblast subtypes associated with distinct immunological niches and positive immunotherapy response

Title: Single cell and spatial analysis of immune-hot and immune-cold tumours identifies fibroblast subtypes associated with distinct immunological niches and positive immunotherapy response
Authors: Jenkins, Benjamin H.; Tracy, Ian; Rodrigues, Maria Fernanda S. D.; Smith, Melanie J. L.; Martinez, Begoña R.; Edmond, Mark; Mahadevan, Sangeetha; Rao, Anjali; Zong, Hailing; Liu, Kai; Aggarwal, Abhishek; Li, Li; Diehl, Lauri; King, Emma V.; Bates, Jamie G.; Hanley, Christopher J.; Thomas, Gareth J.
Contributors: AstraZeneca; Pathological Society of Great Britain and Ireland; Sao Paulo Research Foundation; Gilead Sciences; Cancer Research UK Programme grant; Cancer Research UK Centres Network Accelerator Award Grant
Source: Molecular Cancer ; volume 24, issue 1 ; ISSN 1476-4598
Publisher Information: Springer Science and Business Media LLC
Publication Year: 2025
Description: Cancer-associated Fibroblasts (CAFs) have emerged as critical regulators of anti-tumour immunity, with both beneficial and detrimental properties that remain poorly characterised. To investigate this, we performed single-cell and spatial transcriptomic analysis, comparing head & neck squamous cell carcinoma (HNSCC) subgroups, which although heterogenous, can be considered broadly immune-hot and immune-cold (human papillomavirus [HPV]+ve and HPV-ve tumours respectively). This identified six fibroblast subpopulations, including two with immunomodulatory gene expression profiles ( IL-11 + inflammatory [i]CAF and CCL19 + fibroblastic reticular cell [FRC]-like). IL-11 + iCAF were spatially associated with inflammatory monocytes and regulated in vitro through synergistic activation of canonical NF-κB signalling by IL-1β and TNF-α. FRC-like were enriched in immune-hot HPV+ve tumours, associated with CD4 + T-cells and B-cells in tertiary lymphoid structures and regulated through non-canonical NF-κB signalling via lymphotoxin. Pan-cancer analysis revealed several ‘iCAF’ subgroups present in both normal and cancer tissues; IL11 + iCAF were found in cancers from the gastrointestinal (GI) tract and transcriptomically distinct from iCAFs previously described in pancreatic and breast cancers with greater inflammatory properties; FRC-like fibroblasts were present at low frequencies in all tumour types, and were associated with significantly better survival in patients receiving checkpoint immunotherapy. This work clarifies and expands current literature on immunomodulatory CAFs, highlighting links with important immunological niches.
Document Type: article in journal/newspaper
Language: English
DOI: 10.1186/s12943-024-02191-9
DOI: 10.1186/s12943-024-02191-9.pdf
DOI: 10.1186/s12943-024-02191-9/fulltext.html
Availability: https://doi.org/10.1186/s12943-024-02191-9; https://link.springer.com/content/pdf/10.1186/s12943-024-02191-9.pdf; https://link.springer.com/article/10.1186/s12943-024-02191-9/fulltext.html
Rights: https://creativecommons.org/licenses/by/4.0 ; https://creativecommons.org/licenses/by/4.0
Accession Number: edsbas.CFD03AC1
Database: BASE