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Tumour hypoxia causes DNA hypermethylation by reducing TET activity

Title: Tumour hypoxia causes DNA hypermethylation by reducing TET activity
Authors: Thienpont, Bernard; Steinbacher, Jessica; Zhao, Hui; D'Anna, Flora; Kuchnio, Anna; Ploumakis, Athanasios; Ghesquière, Bart; Van Dyck, Laurien; Boeckx, Bram; Schoonjans, Luc; Hermans, Els; Amant, Frédéric; Kristensen, Vessela N.; Koh, Kian Peng; Mazzone, Max; Coleman, Mathew L.; Carell, Thomas; Carmeliet, Peter; Lambrechts, Diether
Source: ISSN:0028-0836 ; ISSN:1476-4687 ; Nature, vol. 537 (7618), (63-68.
Publisher Information: Nature Publishing Group
Publication Year: 2016
Subject Terms: Science & Technology; Multidisciplinary Sciences; Science & Technology - Other Topics; CANCER; 5-METHYLCYTOSINE; 5-HYDROXYMETHYLCYTOSINE; HYDROXYLASES; METASTASIS; EXPRESSION; MUTATIONS; PHENOTYPE; SUCCINATE; FUMARATE; Animals; Cell Proliferation; DNA Methylation; DNA-Binding Proteins; Dioxygenases; Female; Gene Silencing; Genes; Tumor Suppressor; Humans; Male; Mammary Neoplasms; Animal; Mice; Mixed Function Oxygenases; Oxidation-Reduction; Oxygen
Description: Hypermethylation of the promoters of tumour suppressor genes represses transcription of these genes, conferring growth advantages to cancer cells. How these changes arise is poorly understood. Here we show that the activity of oxygen-dependent ten-eleven translocation (TET) enzymes is reduced by tumour hypoxia in human and mouse cells. TET enzymes catalyse DNA demethylation through 5-methylcytosine oxidation. This reduction in activity occurs independently of hypoxia-associated alterations in TET expression, proliferation, metabolism, hypoxia-inducible factor activity or reactive oxygen species, and depends directly on oxygen shortage. Hypoxia-induced loss of TET activity increases hypermethylation at gene promoters in vitro. In patients, tumour suppressor gene promoters are markedly more methylated in hypoxic tumour tissue, independent of proliferation, stromal cell infiltration and tumour characteristics. Our data suggest that up to half of hypermethylation events are due to hypoxia, with these events conferring a selective advantage. Accordingly, increased hypoxia in mouse breast tumours increases hypermethylation, while restoration of tumour oxygenation abrogates this effect. Tumour hypoxia therefore acts as a novel regulator of DNA methylation. ; sponsorship: We thank G. Peuteman, T. Van Brussel, J. Serneels and K. Kurz for assistance, C. Chang for NucPE1, G.-L Xu for Tet-triple knockout ES cells. H.Z. and B.T. hold FWO-F postdoctoral fellowships. This work was supported by funding from the ERC (CHAMELEON 617595 to D.L; EU-ERC269073 to P.C.; CHAMELEO 334420 to B.T.), from the FWO-F (G065615N, G070615N) to D.L, from the IUAP (P7/03) and the Flemish Government (Methusalem) to RC., and from the DFG (EXC114 (CiPSM), grants CA275/8-5, GRK2062/1 and SPP1784) to T.C. (FWO-F, ERC|CHAMELEON 617595, ERC|EU-ERC269073, ERC|CHAMELEO 334420, FWO-F|G065615N, FWO-F|G070615N, IUAP|P7/03, Flemish Government (Methusalem), DFG|EXC114, DFG|CA275/8-5, DFG|GRK2062/1, DFG|SPP1784, MRC|MR/N021053/1, Biotechnology and Biological ...
Document Type: article in journal/newspaper
File Description: application/pdf
Language: English
Relation: https://lirias.kuleuven.be/handle/123456789/549762; https://doi.org/10.1038/nature19081; https://pubmed.ncbi.nlm.nih.gov/27533040
DOI: 10.1038/nature19081
Availability: https://lirias.kuleuven.be/handle/123456789/549762; https://lirias.kuleuven.be/retrieve/25301a96-6ad4-4aeb-b89a-c5bad612015e; https://doi.org/10.1038/nature19081; https://pubmed.ncbi.nlm.nih.gov/27533040
Rights: info:eu-repo/semantics/openAccess ; public ; All rights reserved
Accession Number: edsbas.D6ECEFA7
Database: BASE