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Identifying proteomic risk factors for cancer using prospective and exome analyses: 1,463 circulating proteins and risk of 19 cancers in the UK Biobank

Title: Identifying proteomic risk factors for cancer using prospective and exome analyses: 1,463 circulating proteins and risk of 19 cancers in the UK Biobank
Authors: Papier, K; Atkins, JR; Tong, TYN; Gaitskell, K; Desai, T; Ogamba, CF; Parsaeian, M; Reeves, GK; Mills, I; Key, TJ; Smith-Byrne, K; Travis, RC
Publisher Information: medRxiv
Publication Year: 2025
Collection: Oxford University Research Archive (ORA)
Description: Background Proteins are essential for the development and progression of cancer and for the human body’s defense against tumor onset. The availability of a large panel of protein measurements and whole exome sequence data in the UK Biobank has enabled the simultaneous examination of plasma protein associations with risk across multiple cancer sites and their potential role in cancer etiology. Methods We investigated the associations of plasma proteins with incidence of 19 cancers and 9 cancer subsites in up to 44,645 middle-aged adults in the UK Biobank, who had measurements of 1,463 plasma proteins generated using Olink Explore Proximity Extension Assay in baseline blood samples (2006-2010). Using multivariable-adjusted Cox regression, we estimated the risk of each protein with each cancer overall and by time-to-diagnosis after correction for multiple-testing. Identified protein-cancer associations were further assessed in an analysis of cancer risk using cis-pQTL and exome-wide protein genetic scores (exGS) in all UK Biobank participants (n=337,543). Results We identified 371 proteins associated with the risk of at least one incident cancer, represented by a total of 621 protein-cancer associations. These proteins were associated with cancers of the blood (201 proteins), liver (131), kidney (51), lung (28), esophagus (22), colorectum (15), stomach (8), breast (5), prostate (3), endometrium (3), ovary (2), bladder (1), head and neck (1), and brain (1). 100 of these 621 protein-cancer associations persisted for cases diagnosed more than seven years after blood draw. Of these 621 associations, there was further support from cis-pQTL analyses for the etiological role of TNFRSF14 in risk of non-Hodgkin lymphoma (NHL), and from whole exome protein score (exGS) analyses for 28 other protein-cancer associations, including SRP14 and risk of leukemia. Proteins with directionally concordant evidence from long time-to-diagnosis analyses and from both cis-pQTL and exGS analyses were SFTPA2 for lung cancer, TNFRSF1B and ...
Document Type: report
Language: English
Relation: https://doi.org/10.1101/2023.07.28.23293330
DOI: 10.1101/2023.07.28.23293330
Availability: https://doi.org/10.1101/2023.07.28.23293330; https://ora.ox.ac.uk/objects/uuid:09bfb3f6-e0dc-4c9d-a5ba-18d8e046cd41
Rights: info:eu-repo/semantics/openAccess ; CC Attribution-NonCommercial-NoDerivatives (CC BY-NC-ND)
Accession Number: edsbas.E69FB9FE
Database: BASE