K-mer based phylogeny of 234 Bc/Bt isolates.
| Title: | K-mer based phylogeny of 234 Bc/Bt isolates. |
|---|---|
| Authors: | Mathilde Bonis (400102); Arnaud Felten (4281799); Sylvie Pairaud (10170906); Angélie Dijoux (10170909); Véronique Maladen (10170912); Ludovic Mallet (4599400); Nicolas Radomski (475617); Arnaud Duboisset (10170915); Chantal Arar (10170918); Xavier Sarda (10170921); Gaelle Vial (4512421); Michel-Yves Mistou (158946); Olivier Firmesse (6597059); Jacques-Antoine Hennekinne (6597056); Sabine Herbin (5266154) |
| Publication Year: | 2021 |
| Collection: | Smithsonian Institution: Digital Repository |
| Subject Terms: | Biochemistry; Medicine; Ecology; Cancer; Science Policy; Environmental Sciences not elsewhere classified; Biological Sciences not elsewhere classified; Chemical Sciences not elsewhere classified; Bt; foodborne outbreaks; FBO |
| Description: | The dataset was composed of 208 Bacillus thuringiensis isolates. Among them, 153 were collected from FBOs, 19 from pesticides, and 32 from the environment (soils or insects). Genomic sequences were obtained in this study after genomic DNA extraction and NGS for 172 isolates, or collected from the NCBI database for 62 isolates. Detailed information related to each isolate is listed in S4 Table . The phylogenic tree was obtained with an in-house script using Mash as distance estimation and neighbor-joining (NJ) as the clustering method. Tree visualization was performed with iTOL v5 [ 46 ]. The IDs of Bt strains isolated from biopesticides were highlighted according to their respective subspecies (green: morrisoni , blue: israelensis , yellow: kurstaki , and orange: aizawai ). The genome IDs from the dominant clade was highlighted in grey. |
| Document Type: | still image |
| Language: | unknown |
| Relation: | https://figshare.com/articles/figure/K-mer_based_phylogeny_of_234_Bc_Bt_isolates_/14067333 |
| DOI: | 10.1371/journal.pone.0246885.g004 |
| Availability: | https://doi.org/10.1371/journal.pone.0246885.g004 |
| Rights: | CC BY 4.0 |
| Accession Number: | edsbas.FAAAD76C |
| Database: | BASE |