Cell line information and gene expression data used for the analysis.
| Title: | Cell line information and gene expression data used for the analysis. |
|---|---|
| Authors: | Laura J. Word; Clinton M. Willis; Richard S. Judson; Logan J. Everett; Sarah E. Davidson-Fritz; Derik E. Haggard; Bryant A. Chambers; Jesse D. Rogers; Joseph L. Bundy; Imran Shah; Nisha S. Sipes; Joshua A. Harrill |
| Publication Year: | 2025 |
| Subject Terms: | Biochemistry; Genetics; Molecular Biology; Immunology; Developmental Biology; Cancer; Biological Sciences not elsewhere classified; transcriptomics technologies allow; different read depths; average pearson correlation; 76 &# 8211; gene ontologies annotated; cellular structure functions; pearson correlation 0; concordant expression levels; 90 – 0; 810 genes ); 290 genes within; principal component analysis; div >< p; calculating relative log; normalized expression data; seq data sets; seq rle data; seq data; ribosomal functions; ontologies associated; data acquisition; 480 genes; well correlated |
| Description: | This file contains additional TempO-seq and RNA-seq information and data for all 39 cell lines included in the study, including but not limited to: the cell culture conditions, the TempO-seq probes and gene expression data for all replicates used for the TempO-seq Phase 1 vs Phase 2 comparison using 6 cell lines, and the gene expression and relative log expression (RLE) data for the TempO-seq vs RNA-seq comparison for all 39 cell lines. (XLSX) |
| Document Type: | dataset |
| Language: | unknown |
| Relation: | https://figshare.com/articles/dataset/Cell_line_information_and_gene_expression_data_used_for_the_analysis_/28995345 |
| DOI: | 10.1371/journal.pone.0320862.s001 |
| Availability: | https://doi.org/10.1371/journal.pone.0320862.s001; https://figshare.com/articles/dataset/Cell_line_information_and_gene_expression_data_used_for_the_analysis_/28995345 |
| Rights: | CC BY 4.0 |
| Accession Number: | edsbas.FFE20529 |
| Database: | BASE |