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Gut microbiome composition and function reflect socioeconomic deprivation

Title: Gut microbiome composition and function reflect socioeconomic deprivation
Authors: Yu Lin; Afroditi Kouraki; Nathan J. Cheetham; Panayiotis Louca; Ruth CE Bowyer; Robert Pope; Francesco Asnicar; Xinyuan Zhang; Alessia Visconti; Mario Falchi; Tim D. Spector; Nicola Segata; Ana M. Valdes; Cristina Menni
Source: npj Biofilms and Microbiomes, Vol 12, Iss 1 (2026)
Publisher Information: Nature Portfolio, 2026.
Publication Year: 2026
Collection: LCC:Microbial ecology
Subject Terms: Microbial ecology; QR100-130
Description: Abstract Socioeconomic status (SES) correlates with adverse health outcomes, but the underlying biological mechanisms remain unclear. We examined how area-level deprivation (Townsend Deprivation Index) influences gut microbiome composition and function and whether the gut microbiome mediates the effects of deprivation on metabolic and mental health. A total of 1390 females from TwinsUK with shotgun metagenomes were included in this study. We found that higher Townsend deprivation was associated with reduced alpha diversity (Beta [95% CI] = −1.60 [−3.00, −0.21]) and distinct microbial composition shifts (PERMANOVA P = 0.001). Twelve species and 22 functional pathways were linked to deprivation, distinguishing between deprivation groups (AUC = 0.725–0.744), with altered energy metabolism in deprived individuals. Townsend deprivation was associated with anxiety (OR [95%CI] = 1.09 [1.01, 1.18]) and diabetes (OR [95% CI] = 1.16 [1.03, 1.30]). Importantly, Intestinimonas massiliensis and Lawsonibacter sp_NSJ_51 partially mediate the effect of anxiety. Lawsonibacter sp_NSJ_51 also mediated the deprivation-diabetes association. These findings suggest that socioeconomic deprivation influences microbiome composition and function, mediating disparities in metabolic and mental health.
Document Type: article
File Description: electronic resource
Language: English
ISSN: 2055-5008
Relation: https://doaj.org/toc/2055-5008
DOI: 10.1038/s41522-026-00917-9
Access URL: https://doaj.org/article/8e537a67dc074ccc8998bbb3f36cd13e
Accession Number: edsdoj.8e537a67dc074ccc8998bbb3f36cd13e
Database: Directory of Open Access Journals