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Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi

Title:	Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi
Authors:	Ingle, Danielle J.^{Aff1, IDs13073025015514_cor1}; Hawkey, Jane^{Aff2, Aff3}; Hunt, Martin^{Aff4, Aff5, Aff6, Aff7}; Iqbal, Zamin^{Aff4, Aff8}; Keane, Jacqueline A.^Aff9; Afolayan, Ayorinde O.^{Aff10, Aff11}; Ahmed, Niyaz^Aff12; Andleeb, Saadia^Aff13; Ashton, Philip M.^{Aff14, Aff15}; Bogoch, Isaac I.^Aff16; Carey, Megan E.^{Aff17, Aff18}; Chattaway, Marie Anne^Aff19; Crump, John A.^Aff20; Diaz Guevara, Paula^Aff21; Howden, Benjamin P.^{Aff1, Aff22, Aff23}; Izumiya, Hidemasa^Aff24; Jacob, Jobin John^Aff25; Judd, Louise M.^{Aff1, Aff23}; Kapil, Arti^Aff26; Keddy, Karen H.^Aff27; Kim, Justin Y.^Aff28; Levine, Myron M.^Aff29; Morita, Masatomo^Aff24; Nair, Satheesh^Aff19; Octavia, Sophie^Aff30; Okeke, Iruka N.^Aff10; Osadebamwen, Precious E.^Aff10; Rahman, Sadia Isfat Ara^Aff31; Rokney, Assaf^Aff32; Rasko, David A.^{Aff29, Aff33, Aff34}; Shamanna, Varun^Aff35; Sikorski, Michael J.^{Aff29, Aff33}; Smith, Anthony M.^{Aff36, Aff37}; Sunmonu, Gabriel T.^Aff10; Tagg, Kaitlin A.^Aff28; Wick, Ryan R.^Aff1; Dyson, Zoe A.^{Aff17, Aff38, IDs13073025015514_cor2}; Holt, Kathryn E.^{Aff2, Aff17, IDs13073025015514_cor3}
Source:	Genome Medicine. 17(1)
Database:	Springer Nature Journals