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GeneCompass: deciphering universal gene regulatory mechanisms with a knowledge-informed cross-species foundation model

Title:	GeneCompass: deciphering universal gene regulatory mechanisms with a knowledge-informed cross-species foundation model
Authors:	Yang, Xiaodong^{Aff1, Aff2, Aff3}; Liu, Guole^{Aff4, Aff5}; Feng, Guihai^{Aff1, Aff6, Aff7}; Bu, Dechao^{Aff2, Aff3, Aff8}; Wang, Pengfei^{Aff3, Aff9}; Jiang, Jie^Aff10; Chen, Shubai^{Aff2, Aff3}; Yang, Qinmeng^Aff9; Miao, Hefan^{Aff1, Aff3}; Zhang, Yiyang^{Aff3, Aff11}; Man, Zhenpeng^{Aff3, Aff11}; Liang, Zhongming^{Aff3, Aff11}; Wang, Zichen^{Aff4, Aff5}; Li, Yaning^{Aff2, Aff3}; Li, Zheng^Aff9; Liu, Yana^Aff1; Tian, Yao^{Aff1, Aff3}; Liu, Wenhao^Aff1; Li, Cong^{Aff1, Aff3}; Li, Ao^{Aff4, Aff5}; Dong, Jingxi^Aff1; Hu, Zhilong^{Aff3, Aff9}; Fang, Chen^{Aff1, Aff3}; Cui, Lina^{Aff1, Aff3}; Deng, Zixu^{Aff2, Aff3}; Jiang, Haiping^{Aff1, Aff3}; Cui, Wentao^{Aff3, Aff9}; Zhang, Jiahao^{Aff3, Aff11}; Yang, Zhaohui^{Aff2, Aff3, Aff8}; Li, Handong^{Aff5, Aff10}; He, Xingjian^Aff10; Zhong, Liqun^{Aff4, Aff5}; Zhou, Jiaheng^{Aff4, Aff5}; Wang, Zijian^Aff9; Long, Qingqing^Aff9; Xu, Ping^{Aff3, Aff9}; Wang, Hongmei^{Aff1, Aff6, Aff7}; Meng, Zhen^{Aff3, Aff9}; Wang, Xuezhi^{Aff3, Aff9}; Wang, Yangang^{Aff3, Aff9}; Wang, Yong^{Aff3, Aff11}; Zhang, Shihua^{Aff3, Aff11}; Guo, Jingtao^{Aff1, Aff3, Aff6, Aff7}; Zhao, Yi^{Aff2, Aff3, Aff8, IDs4142202401034y_cor1}; Zhou, Yuanchun^{Aff3, Aff9, IDs4142202401034y_cor2}; Li, Fei^{Aff3, Aff9, IDs4142202401034y_cor3}; Liu, Jing^{Aff5, Aff10, IDs4142202401034y_cor4}; Chen, Yiqiang^{Aff2, Aff3, IDs4142202401034y_cor5}; Yang, Ge^{Aff4, Aff5, IDs4142202401034y_cor6}; Li, Xin^{Aff1, Aff3, Aff6, Aff7, IDs4142202401034y_cor7}; Li, Xin^Aff12; Wang, Hongmei^Aff12; Hu, Baoyang^Aff12; Li, Wei^Aff12; Gao, Fei^Aff12; Guo, Jingtao^Aff12; Yu, Leqian^Aff12; Gu, Qi^Aff12; Zhai, Weiwei^Aff12; Zou, Zhengting^Aff12; Feng, Guihai^Aff12; Liu, Wenhao^Aff12; Tian, Yao^Aff12; Fang, Chen^Aff12; Dong, Jingxi^Aff12; Liu, Yana^Aff12; Yu, Jingqi^Aff12; Wu, Wenhui^Aff12; Lin, Xinxin^Aff12; Li, Cong^Aff12; Zou, Yu^Aff12; Ren, Yongshun^Aff12; Li, Fan^Aff12; Zhao, Yixiao^Aff12; Xin, Yike^Aff12; Han, Longfei^Aff12; Jiang, Shuyang^Aff12; Ma, Kai^Aff12; Chen, Qicheng^Aff12; Wang, Haoyuan^Aff12; Wu, Huanhuan^Aff12; He, Chaofan^Aff12; Hu, Yilong^Aff12; Guo, Shuyu^Aff12; Li, Yiyun^Aff12; Zhou, Yuanchun^Aff9; Wang, Yangang^Aff9; Wang, Xuezhi^Aff9; Wang, Pengfei^Aff9; Li, Fei^Aff9; Meng, Zhen^Aff9; Wang, Zaitian^Aff9; Xu, Ping^Aff9; Cui, Wentao^Aff9; Hu, Zhilong^Aff9; He, Huimin^Aff9; Zong, Shan^Aff9; Wang, Jiajia^Aff9; Chen, Yan^Aff9; Zhang, Chunyang^Aff9; Wang, Chengrui^Aff9; Zhang, Ran^Aff9; Xiao, Meng^Aff9; Wang, Yining^Aff9; Chen, Yiqiang^Aff13; Zhao, Yi^Aff13; Yang, Xiaodong^Aff13; Bu, Dechao^Aff13; Qin, Xin^Aff13; Qin, Jiaxin^Aff13; Yang, Zhaohui^Aff13; Li, Chenhao^Aff13; Xu, Zhufeng^Aff13; Zhang, Zeyuan^Aff13; Qi, Xiaoning^Aff13; Chen, Shubai^Aff13; Huang, Wuliang^Aff13; Li, Yaning^Aff13; Yang, Ge^Aff10; Liu, Jing^Aff10; Liu, Guole^Aff10; Zhong, Liqun^Aff10; Luo, Yaoru^Aff10; Zhou, Jiaheng^Aff10; Wang, Zichen^Aff10; Luo, Qinxuan^Aff10; Liu, Ziwen^Aff10; Li, Ao^Aff10; Wang, Teng^Aff10; Huang, Yiming^Aff10; Li, Handong^Aff10; Wang, Yong^Aff14; Zhang, Shihua^Aff14; Zhang, Jiahao^Aff14; Zhang, Yiyang^Aff14; Li, Shirui^Aff14; Liang, Zhongming^Aff14; Man, Zhenpeng^Aff14; Dong, Kangning^Aff14; Shen, Qunlun^Aff14
Source:	Cell Research. 34(12):830-845
Database:	Springer Nature Journals